I am trying to test a local docker
image using content from different s3
buckets and getting:
docker: invalid reference format
The ec2
can see the s3
buckets and I am able to ls
and cp
the content in them, but the files are large so I am tying to the -v
and referencing the file local. . Thank you :).
docker run <image> HaplotypeCaller
-R <s3_bucket1>
-I <s3_bucket2>
-L <s3_bucket3>
-O <s3_bucket1>
question from:https://stackoverflow.com/questions/65835822/reference-s3-buckets-in-docker-image