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I was wondering if there is a nice IF NOT EXISTS for checking columns and indexes in SQLite, or do I need to bring back the entire database schema and validate against that?

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There is a system catalog table called sqlite_master that you can use to check index (or other) names:

SELECT name FROM sqlite_master WHERE type='index' ORDER BY name;

You can use a pragma to get the indexed columns:

PRAGMA index_info(index-name);

And this one to get the column names for a table:

PRAGMA table_info(table-name);

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